cellarr

Cell Arrays is a Python package that provides a TileDB-backed store for large collections of genomic experimental data, such as millions of cells across multiple single-cell experiment objects.

Install

To get started, install the package from PyPI

pip install cellarr

Contents

• Cell Arrays
• Install the package
• Build the CellArrDataset
  • Optionally provide cell metadata columns
• Query a CellArrDataset
• A single cell dataloader
• Usage Notes
  • Experimental Data Consistency
  • Cell Metadata
  • Sample Information
  • Handling Metadata Columns with None/NaN Values
  • Metadata contains unicode characters?
• Module Reference
  • cellarr package
• Authors
• Changelog
  • Version 0.5.1 - 0.5.2
  • Version 0.5.0
  • Version 0.4.0
  • Version 0.3.2
  • Version 0.3.0 - 0.3.1
  • Version 0.2.4 - 0.2.5
  • Version 0.2.1 - 0.2.3
  • Version 0.2.0
  • Version 0.1.0 - 0.1.3
• Contributions & Help
  • Issue Reports
  • Documentation Improvements
  • Code Contributions
  • Maintainer tasks
• License

Indices and tables

• Index

• Module Index

• Search Page